Rupture cascades in a discrete element model of a porous sedimentary rock

We investigate the scaling properties of the sources of crackling noise in a fully-dynamic numerical model of sedimentary rocks subject to uniaxial compression. The model is initiated by filling a cylindrical container with randomly-sized spherical particles which are then connected by breakable beams. Loading at a constant strain rate the cohesive elements fail and the resulting stress transfer produces sudden bursts of correlated failures, directly analogous to the sources of acoustic emissions in real experiments. The source size, energy, and duration can all be quantified for an individual event, and the population analyzed for their scaling properties, including the distribution of waiting times between consecutive events. Despite the non-stationary loading, the results are all characterized by power law distributions over a broad range of scales in agreement with experiments. As failure is approached temporal correlation of events emerge accompanied by spatial clustering.Comment: 5 pages, 4 figure

Do climate models reproduce complexity of observed sea level changes?

The ability of Atmosphere-Ocean General Circulation Models (AOGCMs) to capture the statistical behavior of sea level (SL) fluctuations has been assessed at the local scale. To do so, we have compared scaling behavior of the SL fluctuations simulated in the historical runs of 36 CMIP5 AOGCMs to that in the longest (>100 years) SL records from 23 tides gauges around the globe. The observed SL fluctuations are known to manifest a power law scaling. We have checked if the SL changes simulated in the AOGCM exhibit the same scaling properties and the long-term correlations as observed in the tide gauge records. We find that the majority of AOGCMs overestimates the scaling of SL fluctuations, particularly in the North Atlantic. Consequently, AOGCMs, routinely used to project regional SL rise, may underestimate the part of the externally driven SL rise, in particular the anthropogenic footprint, in the projections for the 21st century

Acceleration and localization of subcritical crack growth in a natural composite material

Catastrophic failure of natural and engineered materials is often preceded by an acceleration and localization of damage that can be observed indirectly from acoustic emissions (AE) generated by the nucleation and growth of microcracks. In this paper we present a detailed investigation of the statistical properties and spatiotemporal characteristics of AE signals generated during triaxial compression of a sandstone sample. We demonstrate that the AE event amplitudes and interevent times are characterized by scaling distributions with shapes that remain invariant during most of the loading sequence. Localization of the AE activity on an incipient fault plane is associated with growth in AE rate in the form of a time-reversed Omori law with an exponent near 1. The experimental findings are interpreted using a model that assumes scale-invariant growth of the dominating crack or fault zone, consistent with the Dugdale-Barenblatt “process zone” model. We determine formal relationships between fault size, fault growth rate, and AE event rate, which are found to be consistent with the experimental observations. From these relations, we conclude that relatively slow growth of a subcritical fault may be associated with a significantly more rapid increase of the AE rate and that monitoring AE rate may therefore provide more reliable predictors of incipient failure than direct monitoring of the growing fault

Modelling marine emissions and atmospheric distributions of halocarbons and dimethyl sulfide: the influence of prescribed water concentration vs. prescribed emissions

Marine-produced short-lived trace gases such as dibromomethane (CH2Br2), bromoform (CHBr3), methyliodide (CH3I) and dimethyl sulfide (DMS) significantly impact tropospheric and stratospheric chemistry. Describing their marine emissions in atmospheric chemistry models as accurately as possible is necessary to quantify their impact on ozone depletion and Earth's radiative budget. So far, marine emissions of trace gases have mainly been prescribed from emission climatologies, thus lacking the interaction between the actual state of the atmosphere and the ocean. Here we present simulations with the chemistry climate model EMAC (ECHAM5/MESSy Atmospheric Chemistry) with online calculation of emissions based on surface water concentrations, in contrast to directly prescribed emissions. Considering the actual state of the model atmosphere results in a concentration gradient consistent with model real-time conditions at the ocean surface and in the atmosphere, which determine the direction and magnitude of the computed flux. This method has a number of conceptual and practical benefits, as the modelled emission can respond consistently to changes in sea surface temperature, surface wind speed, sea ice cover and especially atmospheric mixing ratio. This online calculation could enhance, dampen or even invert the fluxes (i.e. deposition instead of emissions) of very short-lived substances (VSLS). We show that differences between prescribing emissions and prescribing concentrations (−28 % for CH2Br2 to +11 % for CHBr3) result mainly from consideration of the actual, time-varying state of the atmosphere. The absolute magnitude of the differences depends mainly on the surface ocean saturation of each particular gas. Comparison to observations from aircraft, ships and ground stations reveals that computing the air–sea flux interactively leads in most of the cases to more accurate atmospheric mixing ratios in the model compared to the computation from prescribed emissions. Calculating emissions online also enables effective testing of different air–sea transfer velocity (k) parameterizations, which was performed here for eight different parameterizations. The testing of these different k values is of special interest for DMS, as recently published parameterizations derived by direct flux measurements using eddy covariance measurements suggest decreasing k values at high wind speeds or a linear relationship with wind speed. Implementing these parameterizations reduces discrepancies in modelled DMS atmospheric mixing ratios and observations by a factor of 1.5 compared to parameterizations with a quadratic or cubic relationship to wind spee

Methods for determining ploidy in amphibians: Nucleolar number and erythrocyte size

Diploid and triploid Xenopus can be easily and reliably distinguished by the size of their erythrocytes. This method has several advantages over other methods, such as counting metaphase chromosomes and counting nucleoli. One problem with the latter method is the reduction in cells with a full complement of nucleoli when regenerating tissue is used.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/42719/1/18_2005_Article_BF01970141.pd

Avalanche precursors of failure in hierarchical fuse networks

We study precursors of failure in hierarchical random fuse network models which can be considered as idealizations of hierarchical (bio)materials where fibrous assemblies are held together by multi-level (hierarchical) cross-links. When such structures are loaded towards failure, the patterns of precursory avalanche activity exhibit generic scale invariance: Irrespective of load, precursor activity is characterized by power-law avalanche size distributions without apparent cut-off, with power-law exponents that decrease continuously with increasing load. This failure behavior and the ensuing super-rough crack morphology differ significantly from the findings in non-hierarchical structures

Enigmatic persistence of dissolved organic matter in the ocean

Marine dissolved organic matter (DOM) contains more carbon than the combined stocks of Earth’s biota. Organisms in the ocean continuously release a myriad of molecules that become food for microheterotrophs, but, for unknown reasons, a residual fraction persists as DOM for millennia. In this Perspective, we discuss and compare two concepts that could explain this persistence. The long-standing ‘intrinsic recalcitrance’ paradigm attributes DOM stability to inherent molecular properties. In the ‘emergent recalcitrance’ concept, DOM is continuously transformed by marine microheterotrophs, with recalcitrance emerging on an ecosystems level. Both concepts are consistent with observations in the modern ocean, but they imply very different responses of the DOM pool to climate-related changes. To better understand DOM persistence, we propose a new overarching research strategy — the ecology of molecules — that integrates the concepts of intrinsic and emergent recalcitrance with the ecological and environmental context

Determining the oxidation state of elements by X ray crystallography

Protein-mediated redox reactions play a critical role in many biological processes and often occur at centres that contain metal ions as cofactors. In order to understand the exact mechanisms behind these reactions it is important to not only characterize the three-dimensional structures of these proteins and their cofactors, but also to identify the oxidation states of the cofactors involved and to correlate this knowledge with structural information. The only suitable approach for this based on crystallographic measurements is spatially resolved anomalous dispersion (SpReAD) refinement, a method that has been used previously to determine the redox states of metals in iron–sulfur cluster-containing proteins. In this article, the feasibility of this approach for small, non-iron–sulfur redox centres is demonstrated by employing SpReAD analysis to characterize Sulfolobus tokodaii sulerythrin, a ruberythrin-like protein that contains a binuclear metal centre. Differences in oxidation states between the individual iron ions of the binuclear metal centre are revealed in sulerythrin crystals treated with H(2)O(2). Furthermore, data collection at high X-ray doses leads to photoreduction of this metal centre, showing that careful control of the total absorbed dose is a prerequisite for successfully determining the oxidation state through SpReAD analysis

Brominated VSLS and their influence on ozone under a changing climate

Very short-lived substances (VSLS) contribute as source gases significantly to the tropospheric and stratospheric bromine loading. At present, an estimated 25 % of stratospheric bromine is of oceanic origin. In this study, we investigate how climate change may impact the ocean–atmosphere flux of brominated VSLS, their atmospheric transport, and chemical transformations and evaluate how these changes will affect stratospheric ozone over the 21st century. Under the assumption of fixed ocean water concentrations and RCP6.0 scenario, we find an increase of the ocean–atmosphere flux of brominated VSLS of about 8–10 % by the end of the 21st century compared to present day. A decrease in the tropospheric mixing ratios of VSLS and an increase in the lower stratosphere are attributed to changes in atmospheric chemistry and transport. Our model simulations reveal that this increase is counteracted by a corresponding reduction of inorganic bromine. Therefore the total amount of bromine from VSLS in the stratosphere will not be changed by an increase in upwelling. Part of the increase of VSLS in the tropical lower stratosphere results from an increase in the corresponding tropopause height. As the depletion of stratospheric ozone due to bromine depends also on the availability of chlorine, we find the impact of bromine on stratospheric ozone at the end of the 21st century reduced compared to present day. Thus, these studies highlight the different factors influencing the role of brominated VSLS in a future climate